PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023024-PA
Common NameOsI_23206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 401aa    MW: 42452.2 Da    PI: 5.8435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023024-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.8e-14136186255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  BGIOSGA023024-PA 136 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 186
                       689*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-14136190No hitNo description
Gene3DG3DSA:4.10.280.103.0E-14136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16136207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGDALCDQLL LVDSDGGEFI PHHADADADD LFTILETWED CANVVAGGAP ATTTTLGSPI  60
AAAACISGVV GGQNHQQLPE PAAAKTVPAT NNKRREEEVA DRDGDGDDDD GSPQKRHKCC  120
SPESSTTDVA AATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD  180
YIKELQQVLH SLEAKKQRKV YTDQVLSPRP PATVAASCCS PRPPPLSPKL PPQLLKSTPP  240
LSPRLAVPIS PRTPPTPGSP YRLLRLPPPP PPASGSNYAS PAMTPTHHET AAPSLDAIAA  300
ELSAYASRQA LGGGLLLPDV KVEFAGANLV LKTVSQRSPG QAVKIIAALE GRSLEILHAK  360
ISTVDDTAVN SFTVKYIFGQ IGIECELSAE ELVQVIQQTF T
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.730310.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567640970.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874820.0AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642808.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C76e-67SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA2YDL70.0A2YDL7_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA023024-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-33bHLH family protein